PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.180080.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family FAR1
Protein Properties Length: 847aa    MW: 97270.2 Da    PI: 7.1054
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.180080.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR185.48.9e-2788190191
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 
                     +fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g ++e +k+            +e++  +ra  +t+Cka+++vk++ dgkw+++++++
  Cucsa.180080.1  88 SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGMKREYDKSfnrprvrqtkqeSENSTGRRACAKTDCKASMHVKRRADGKWVIHSFVK 182
                     5*******************************************999*****99976555555559999************************** PP

            FAR1  84 eHnHelap 91 
                     eHnHel p
  Cucsa.180080.1 183 EHNHELLP 190
                     *****975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.6E-2588190IPR004330FAR1 DNA binding domain
PfamPF105516.2E-27288380IPR018289MULE transposase domain
PROSITE profilePS509668.963568604IPR007527Zinc finger, SWIM-type
PfamPF044341.3E-5569603IPR007527Zinc finger, SWIM-type
SMARTSM005751.6E-7579606IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010218Biological Processresponse to far red light
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 847 aa     Download sequence    Send to blast
MDIDLRLPSG EHDKEEEPNG INNMLDVEEK LHNGVIESGD MVDATNGMHV EDGGNLNSPM  60
LDMVMFKEDT NLEPLPGMEF ESHSEAYSFY QEYARSMGFN TAIQNSRRSK TSREFIDAKF  120
ACSRYGMKRE YDKSFNRPRV RQTKQESENS TGRRACAKTD CKASMHVKRR ADGKWVIHSF  180
VKEHNHELLP AQAVSEQTRK MYAAMARQFA EYKNVVGLKN DPKNPFDKVR NLAFDAADAK  240
ILLDFLTQMQ NLNSNFFYAV DIGDDHRLRN LFWIDAKSRH DYSYFNDVVS LDTTYIRNKY  300
KLPLAFFVGV NQHYQFMLLG CALLSDETPT TYAWLLHIWL KAIGGQAPKV IITDHDKVLK  360
TAVQEVLPNA YHHFTLWHIL GKFSENLGNI IKRHENFMAK FEKCIYKSWT IEEFEKRWLK  420
LVDRFELKED ELVQSLCEDQ RHWAPTYMKD VFLAGMSMPQ RSESVNSFLD KYLHKKTSVQ  480
EFVKQYETIL QDRYEEEAKA DSDTWNKQPT LRSPSPFEKS VSGLYTHAVF KKFQVEVLGA  540
VACFPRKVKE DEKNITYKVQ DLEKDLEFVV VWNGLKSEVS CLCRLYEYKG YLCRHAMVVL  600
QKCELSTIPA QYILKRWTKD AKSRQLMGEE LEPVQSRVQR YNDLCQRALR LIEEGSMSQE  660
SYSIAVHALE ETLGNCISVN NSNRTFLEAG TSAAHGLLCI EEDSHIRSIG KTNKKKNPTK  720
KRKVNCEPDV MTVGAQDSLQ QMDKLSSRAV TLDGYFGAQP SVQGMVQLNL MAPTRDNYYG  780
NQQAIQGLGQ LNSIAPSHDG YYAAQQSIHG LGQMDFFRTA AGFTYGIRDD PNVRTTQLHD  840
DASRHA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00078ChIP-seqTransfer from AT3G22170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818730.0LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004147733.10.0PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3
RefseqXP_011653256.10.0PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3
RefseqXP_011653257.10.0PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3
SwissprotQ9LIE50.0FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBLM5WR230.0M5WR23_PRUPE; Uncharacterized protein
STRINGVIT_03s0017g01780.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.20.0far-red elongated hypocotyls 3